CDS

Accession Number TCMCG006C99973
gbkey CDS
Protein Id XP_013668217.1
Location complement(join(51570821..51571676,51571971..51572155,51572239..51573407,51573590..51573654,51573773..51573827,51573911..51574060,51574148..51574256,51574325..51574468,51574588..51574740,51574811..51574865,51574941..51575324,51575400..51575467,51575562..51575645,51575738..51575896,51575973..51576128,51576217..51576470,51577181..51577400))
Gene LOC106372532
GeneID 106372532
Organism Brassica napus

Protein

Length 1421aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA293435
db_source XM_013812763.2
Definition protein RNA-directed DNA methylation 3-like isoform X3 [Brassica napus]

EGGNOG-MAPPER Annotation

COG_category K
Description Early transcription elongation factor of RNA pol II, NGN section
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
KEGG_ko ko:K15172        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003682        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006304        [VIEW IN EMBL-EBI]
GO:0006305        [VIEW IN EMBL-EBI]
GO:0006306        [VIEW IN EMBL-EBI]
GO:0006325        [VIEW IN EMBL-EBI]
GO:0006342        [VIEW IN EMBL-EBI]
GO:0006351        [VIEW IN EMBL-EBI]
GO:0006354        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006357        [VIEW IN EMBL-EBI]
GO:0006366        [VIEW IN EMBL-EBI]
GO:0006368        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008023        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016246        [VIEW IN EMBL-EBI]
GO:0016441        [VIEW IN EMBL-EBI]
GO:0016458        [VIEW IN EMBL-EBI]
GO:0018130        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019438        [VIEW IN EMBL-EBI]
GO:0030422        [VIEW IN EMBL-EBI]
GO:0031047        [VIEW IN EMBL-EBI]
GO:0031050        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032044        [VIEW IN EMBL-EBI]
GO:0032259        [VIEW IN EMBL-EBI]
GO:0032774        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034654        [VIEW IN EMBL-EBI]
GO:0035194        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043331        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043414        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044728        [VIEW IN EMBL-EBI]
GO:0045814        [VIEW IN EMBL-EBI]
GO:0045892        [VIEW IN EMBL-EBI]
GO:0045934        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051253        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0070918        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071359        [VIEW IN EMBL-EBI]
GO:0071407        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0080188        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0097659        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1901698        [VIEW IN EMBL-EBI]
GO:1901699        [VIEW IN EMBL-EBI]
GO:1902679        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903507        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGATCGTAAGGGAAAGGGAAAACAAATCGCCGGAGCTGGATCCTCTTCCGGAAAGAAACGGAAAGGAGGAGGAGGAGTCGAGTTTAGAGACGAAGGCTTGAGGATTAACAGTAAGCGTAAAAAACCTGGGGTTCTTCAGTTCTTCGAGGAATCCGCCGAGGTTGGGTACTATGGAGGTAGCTCCGACGAGGAATGCGACATGGATGATCTCTTCAACGATATGGAAGATGAGCCTGAGGTAGAGACAAGTGGAAAAGATGACAAGGGGGGAAAGGGAAAAGGCAGCTCTTCCTTTGTTTTCCCCAAGGAAGAGGAGATGAATGAGGATAATTACGATAGGATGATGGAAGAAAGATACAAGCCTGGTTCTGGGTTTGTTAGATACGCAGCTGATGATGTGAAAAGTTCCATCGAGATGGATGCTCTTGTTCCTACTGCTCATGATCCTCCGATATGGAAAATAAAGTGTGCGATTGGACGGGAGAAGCATTCAGTCTTCTGTCTCATGCACAAATTTGTGGAGCTGAGGAAGATAGGCACCAAACTAAAGATCTTGTCTGTCTTCTTTGTGGAGCATGTCAAGGGGTTTATCTTCATAGAAGCTGACAAGGAACAGGATGTTCTTGAGGCATGCATGAGTTTGAACGGAATCTACGCCACTCGGATGATGCTACTTCCTAAATCTGAAGCTCCACATCTGCTCACTGTACAAAGAAAAACCAAAACCTTTTCTGAGGGAACATGGGCTCGTATTAAGAGTGGTAAATACAAAGGAGATCTTGCTCAGGTTGTGGCTGTGAGTGACACTCGGGGAAAAGCTCTGATAAAGTTGATTCCAAGGATTGATATAGCGGCGCTTACCCAAAAATATGGTGGAGGAGTTATTGCCCAAAAAGGCCTGAACCCAGCTCCGAGATTAATCAGTTCAAGCGAGCTTGAAGAGTTCAGACCTATCATTCAAGTGAGACGTGATCGTGACACTGGAATGACTTTTGAGCATCTTGATAGCCTGATGCTGAAAGATGGCTTCCTGTACAAAAAAGTATCCTTGGATTCACTCACTTCCTGTGGGGTTAAACCGTCAAAGGAGGAGATACTAAAATTCACTCCTTTAGAAGAGAAAGAAACTGGTGACGTGGAGTGGATTTCCGAAATTTATGGTGAAGAAAAGAAGAAGAAGAGTATTCCCGCTGGCAAAGGGGTTGAGAAAGGAGAAGGATCAGGGGGTGGAAAAGGAGAAGGATCAGGGGGTGGAAAGGGAGAAGGATCATCAGAATCTAAGTCAGAGAGTAGCCATGAGTTATATAATCTAGTTTGTTTCAGTCGTAAAGACTTCGGTCTGATTGTGGGAGTGGATGACAAAGGCGACGGCTACAAGGTTCTGAAAGAAGGTTCTGATGGACCTGTTGTAGTCAGTGTTGGAAAAAAGGAGATGCAGGAACCGTTCGATTCAAAATTTTCTGCCCTGGATCTGAATAACAAACAAATTTCGATCGGTGATGTTGTGAAGATTGCCAAAGGCCCATCTGAGGGTAAACAAGGAGTTGTGAGGCAAGTATACAGAGGGATTATATTTCTTTATGCTGAGGGTGAGGAAGAAAATGGTGGATACTTGTGTTGCAAATCACAATCGTGTGAGAAAGTTAAACTTTTCACTGAAGAATCCAATGACAAGACTGGTGGATTTGACGCTTCTGCTTTTGGAGATTCTGCATCCTCTCCTAAATCGCCACTATCTCCTGAAAAAGAGTGGCAGCAGCAGCCCAAGGAGAAATACATTAACTCCAACCAGGGAGACAAAGGTAGCATGTATTCCATAGGCCAAAAGCTGAGGATACGTGTAGGTCCACTGAAGGGGTATCTCTGCCGTGTAATAGCGTTGCGCTATTCAGATATCACAGTGAAACTTGATTCCCAGCATAAAATTTTTACAGTTAAAAGTGAGCATCTTGCTGAGGTTCGTGACAGAAATACTGTGCCAAGTATGAGTGGGGATGCTGGGATGGGTTCCTTTCAACAATTTGACATGCTTGGAACAGAAGGCAACAATGGAGACTGGGCAAAAGGAGCAGGCACGTCAGAAGATAATACTTCAACGTGGGGCAGTACAGCAGCTGAGAACAAACCTGACTCTGCTGGTGATCAATCCGGTGGTTGGAATGCCTGGGGTAAACCACCTGCTCCTGAAGCTAGCACTGTTGGTGCTTGGGGAGATGCAAGTACTCCAAAAGTTGAAGCTTCTTGGGGAAAACAAGGAGCTTCAACTTCCAATGTTGAAGATTCAGGTTCTTGGGGTAAGCATGGTGGAAGCTCTGATGGTAACAAACAAAACGATGACTCAGTATGGGGTAAACTAGTTGAAGAATCAAGCCAGAAGAAAGAAGAATCTTCTTGGGGAAAAAAAACGGGATCTGATTCTGATTTGGGAAAAGGAAATGGAGAATCTACTTGGGGAAACAAAGATGGAAATTCCAGCGCAAGTAACAAAGAGGGAGTTTCCTGGGGGCAACATGATAAAGGCTCTGACGGGGACCAGGGAGGATCATCGTGGGGTAAGAAGAACGACAGTGTTAAAGATGATGGAGGGTCTTCTTGGGGTAAGAAGGATGATGGAGGCTCAACGTGGGGTAAGAAGGACGATGGAGGATCTTCATGGGGTAAAAAGGTTGATGACGTTATCAAGGATGACGGAGGATCATCTTGGGACAAAAAGGTTGAGGGTAATAAGGATGATGGAGGATCATCTTGGGGCAAAAAGATTGAGGGTAATAAGGATGATGGAGGATCATCTTGGGGTAAAAAGGTTGACTGTAACAAGGATGATGGAGGATCTTCTTGGGGCAAAAAAGTTGAGGGTAATAAGGATGATGGAGGATCATCTTGGGGTAAAAAGGTTGACTGTAATAAGGATGATGGAGGATCGTCTTGGGGAAAAAAGGATGACGGTGGACCTTCTTGGAACAAAAAGGATGACGGTAATAAGGATGATGGAGGATCGGCTTGGGGTAAAAAGGTTGAAAGTGGATCTTCTTGGGGAAACAAGGATGGTGGATCTTCTTGGGGGAACAAAGATGGTGGATCTTCTTGGGCCAAAAAGGATGATGGAGGGTACTCAGAACAAACATTTGATAGGGGAGGACGTGGGTTTGGTGGTAGAAGAGGTGGCGGTCGTCGAGGTGGTAGGGATCAGTTTGGGAGGGGAAGATCCTTTGGTCATTCGGAGGATCAAGCTCCATGGAGTAAACCAGGTGGTGGTGGCGGTTCAAGCTGGGGTAAGCAAGACAGTGGTGGAGGCGGTTCAAGCTGGGGTAAAGATAATGATGCTGGTGGTGGATCTAGCTGGGGCAAGCAGAATAATGCTGGTGGTGGCGGCGGTTCAAGTTGGAGTAAAGATAATGATGCTGGTGGTGGTGGTGGATCTAGCTGGGGAAAGCAAGGCAGTGATGGCGGAGGCTCTAGCTGGGGAAAGAAAAATGATGCTGGTGGTGGCGGTTCAAGCTGGGGAAAGCAAGGCAGTGACGGGGGAGGCTCTAGCTGGGGGAAGAAAAGTGATGGTGGTGGTGGTGGTTCAAGCTGGGGTCAACAGGGTGGTGGTGGTGGTTCTGCTTGGGGTAAGCAGAACAACGATGGTGGTGGAGGACAAAGCTGGTCCAAACAAGATGATGGCGGTTCTAAACCGTGGGGAGAACAGAGTGGTGGTCGTGGGTTTGGAGGAAGAAGAGGAGGGGGATTCCGAGGAGGTTTCCGCGGAGGTAGAAACCAATCAGGTAGAGATGGAGGAGGACGCTCGTTTGAATCATCTGGCTGGAAGAGAGACAATCAAGAAAACACCACTTGGAAGAGCAACAACCAGAGTGGTGGATCAGACTGGAAAAAATCGTGGGGAGAGGATTCAAACACTGCAAAGCCATCTGATTCATCATCAGCTGGTGGAAACTGGGGTAGCTGGGATGCTAATTCCAAGAAAGAAACCAATGCTGGTGGAGGCTGGGGTGCTAACTCCAAGAATGAAACCAGTACTGGTGGAGACTGGGGTAGTAACTCAAAGAAAGAAACCAATGCTGTTGATGGTGACAAACCAAGCAATGAAAACAAAGCAGCGGCAGCTTGGGGAACCGCTAACGATCAGGAGAATGCAGGAAACAACAATGATGGTTGGGGCAAAAAGCCAAGTGATGATGTTAAAACGAGTGGAGAAGCTGATAATGCTTGGGGAGGCAAGACAAACGCAGGAGCATCGTCATCAAGTGGCTCTGCGTGGTGA
Protein:  
MDRKGKGKQIAGAGSSSGKKRKGGGGVEFRDEGLRINSKRKKPGVLQFFEESAEVGYYGGSSDEECDMDDLFNDMEDEPEVETSGKDDKGGKGKGSSSFVFPKEEEMNEDNYDRMMEERYKPGSGFVRYAADDVKSSIEMDALVPTAHDPPIWKIKCAIGREKHSVFCLMHKFVELRKIGTKLKILSVFFVEHVKGFIFIEADKEQDVLEACMSLNGIYATRMMLLPKSEAPHLLTVQRKTKTFSEGTWARIKSGKYKGDLAQVVAVSDTRGKALIKLIPRIDIAALTQKYGGGVIAQKGLNPAPRLISSSELEEFRPIIQVRRDRDTGMTFEHLDSLMLKDGFLYKKVSLDSLTSCGVKPSKEEILKFTPLEEKETGDVEWISEIYGEEKKKKSIPAGKGVEKGEGSGGGKGEGSGGGKGEGSSESKSESSHELYNLVCFSRKDFGLIVGVDDKGDGYKVLKEGSDGPVVVSVGKKEMQEPFDSKFSALDLNNKQISIGDVVKIAKGPSEGKQGVVRQVYRGIIFLYAEGEEENGGYLCCKSQSCEKVKLFTEESNDKTGGFDASAFGDSASSPKSPLSPEKEWQQQPKEKYINSNQGDKGSMYSIGQKLRIRVGPLKGYLCRVIALRYSDITVKLDSQHKIFTVKSEHLAEVRDRNTVPSMSGDAGMGSFQQFDMLGTEGNNGDWAKGAGTSEDNTSTWGSTAAENKPDSAGDQSGGWNAWGKPPAPEASTVGAWGDASTPKVEASWGKQGASTSNVEDSGSWGKHGGSSDGNKQNDDSVWGKLVEESSQKKEESSWGKKTGSDSDLGKGNGESTWGNKDGNSSASNKEGVSWGQHDKGSDGDQGGSSWGKKNDSVKDDGGSSWGKKDDGGSTWGKKDDGGSSWGKKVDDVIKDDGGSSWDKKVEGNKDDGGSSWGKKIEGNKDDGGSSWGKKVDCNKDDGGSSWGKKVEGNKDDGGSSWGKKVDCNKDDGGSSWGKKDDGGPSWNKKDDGNKDDGGSAWGKKVESGSSWGNKDGGSSWGNKDGGSSWAKKDDGGYSEQTFDRGGRGFGGRRGGGRRGGRDQFGRGRSFGHSEDQAPWSKPGGGGGSSWGKQDSGGGGSSWGKDNDAGGGSSWGKQNNAGGGGGSSWSKDNDAGGGGGSSWGKQGSDGGGSSWGKKNDAGGGGSSWGKQGSDGGGSSWGKKSDGGGGGSSWGQQGGGGGSAWGKQNNDGGGGQSWSKQDDGGSKPWGEQSGGRGFGGRRGGGFRGGFRGGRNQSGRDGGGRSFESSGWKRDNQENTTWKSNNQSGGSDWKKSWGEDSNTAKPSDSSSAGGNWGSWDANSKKETNAGGGWGANSKNETSTGGDWGSNSKKETNAVDGDKPSNENKAAAAWGTANDQENAGNNNDGWGKKPSDDVKTSGEADNAWGGKTNAGASSSSGSAW